PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG541100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 277aa    MW: 30940.8 Da    PI: 7.0117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG541100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.5e-064796154
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                         +++ ++erE+r Rd+ N+ f eL  +l ++     + + Ka iL  +++ +k+L
  Pavir.2KG541100.1.p 47 KKVHKSEREKRKRDKQNDLFGELGNMLEPD----RQNNGKACILSDTTRMLKDL 96
                         678899**********************97....57788999999999988877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-1043117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-1243114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-444101No hitNo description
PROSITE profilePS5088811.2934696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-54796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MTPLPSPAVT TGRAAARFVL SSPSPLPAMN ASSRPVLNNK CEKKAPKKVH KSEREKRKRD  60
KQNDLFGELG NMLEPDRQNN GKACILSDTT RMLKDLLSQV ESLRQENGSL KNESRYVALE  120
RNELLDENNM IRNEISELQN ELRMRMEGNP IWSHDATRSN LTAAHPHTTV FVLQHSPHPP  180
VIATMAPPLQ QLEVLEQSYT TSRRELQLFP EAASTEDTEP QQDQGISNHV TRPQARYATR  240
MTTLPAHVYP VLQRMEDEQC SSGTTGSGDE GAICNH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.203990.0callus| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463230.11e-144hypothetical protein SORBIDRAFT_02g040140
TrEMBLC5X3661e-144C5X366_SORBI; Putative uncharacterized protein Sb02g040140
STRINGSb02g040140.11e-143(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-31bHLH family protein